ZBH - Center for Bioinformatics

 Create Protoss Job

  Creates a new Protoss job passing json data in body and returns json data about the location of the results.

• URL

  https://proteins.plus/api/protoss_rest

• Method:

  POST

• URL Params

  None

• Data Params

  Required:
  

  
              protoss=[hash] - Contains the following parameters:
  
              pdbCode=[string] - Select a structure form the Protein Data Bank (PDB) via its PDB code.
          

• Success Response:

  • Code: 200
    Content: { status_code: 200, location: "", message: "Job already exists" }

  OR

  • Code: 202
    Content: { status_code: 202, message: "The job will be created in the specified location", location: "" }

  OR

  • Code: 202
    Content: { status_code: 202, message: "Job exists and is still in 'processing' state", location: "" }



• Error Response:

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Parameter values must be strings" }

  OR

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Invalid number of parameters or incorrect parameter name" }

  OR

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Invalid pdbCode" }

  OR

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Job saving error" }

  OR

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Job loading error" }

  OR

  • Code: 429 TOO MANY REQUESTS
    Content: { status_code: 429, error: "Too Many Requests", message: "Throttle limit reached. Retry later." }



• Sample Data:

  {
              "protoss": {
              "pdbCode":"1kzk"}
              }
          

• Sample Call (curl):

  
              curl -d '{"protoss": {"pdbCode":"1kzk"}}' -H "Accept: application/json" -H "Content-Type: application/json" -X POST https://proteins.plus/api/protoss_rest
          

 Show Protoss Job

  Returns json data about a single Protoss job.

• URL

  https://proteins.plus/api/protoss_rest/:id

• Method:

  GET

• URL Params

  Required:

  id=[string]

• Data Params

  None

• Success Response:

  • Code: 200
    Content: { status_code: 200, protein: "", ligands: "", log: "" }

  OR

  • Code: 202
    Content: { status_code: 202, message: "Job exists and is still in 'processing' state", location: "" }



• Error Response:

  • Code: 400 BAD REQUEST
    Content: { status_code: 400, error: "Bad Request", message: "Job loading error" }

  OR

  • Code: 404 NOT FOUND
    Content: { status_code: 404, error: "Not Found", message: "Invalid ID" }

  OR

  • Code: 429 TOO MANY REQUESTS
    Content: { status_code: 429, error: "Too Many Requests", message: "Throttle limit reached. Retry later." }
  
  

• Sample Call (curl):

  
                  curl https://proteins.plus/api/protoss_rest/ixenp5kLNHohrRbj56fbt4dd
              

• Output:

  
  protein - protein structure with optimal hydrogen bonding network (PDB-file)
  
  ligand - ligand structure with optimal hydrogen bonding network (SDF-file)
  
  log - output info, logged is the removal of alternate conformations or overlapping entries (TXT-file)